Index

B

binarize (tests.test_core.TestFeaturize attribute)

C

classes (tests.test_core.TestClassify attribute)

classify() (in module indigopy.core)

E

entropy (tests.test_core.TestFeaturize attribute)

F

feature_names (tests.test_core.TestFeaturize attribute)

featurize() (in module indigopy.core)

I

indigopy module indigopy.core module

input1 (tests.test_core.TestLoadSample attribute) input2 (tests.test_core.TestLoadSample attribute) input3 (tests.test_core.TestLoadSample attribute) input4 (tests.test_core.TestLoadSample attribute) interactions (tests.test_core.TestFeaturize attribute)

K

key (tests.test_core.TestFeaturize attribute)

L

load_sample() (in module indigopy.core)

M

module indigopy indigopy.core tests tests.test_core

N

na_handle (tests.test_core.TestFeaturize attribute)

norm_method (tests.test_core.TestFeaturize attribute) normalize (tests.test_core.TestFeaturize attribute)

O

orthology_map (tests.test_core.TestFeaturize attribute)

P

profiles (tests.test_core.TestFeaturize attribute)

profiles_alt (tests.test_core.TestFeaturize attribute)

R

remove_zero_rows (tests.test_core.TestFeaturize attribute)

S

scores (tests.test_core.TestClassify attribute)

silent (tests.test_core.TestFeaturize attribute) strains (tests.test_core.TestFeaturize attribute)

T

test_classify_classes() (tests.test_core.TestClassify method) test_classify_default() (tests.test_core.TestClassify method) test_classify_thresholds() (tests.test_core.TestClassify method) test_featurize_binarize() (tests.test_core.TestFeaturize method) test_featurize_default() (tests.test_core.TestFeaturize method) test_featurize_entropy() (tests.test_core.TestFeaturize method) test_featurize_feature_names() (tests.test_core.TestFeaturize method) test_featurize_key_and_silent() (tests.test_core.TestFeaturize method) test_featurize_na_handle() (tests.test_core.TestFeaturize method) test_featurize_normalize_and_norm_method() (tests.test_core.TestFeaturize method) test_featurize_remove_zero_rows() (tests.test_core.TestFeaturize method) test_featurize_strains_and_orthology_map() (tests.test_core.TestFeaturize method) test_featurize_thresholds() (tests.test_core.TestFeaturize method) test_featurize_time_and_time_values() (tests.test_core.TestFeaturize method)

test_load_sample_abaumannii() (tests.test_core.TestLoadSample method) test_load_sample_ecoli() (tests.test_core.TestLoadSample method) test_load_sample_mtb() (tests.test_core.TestLoadSample method) test_load_sample_saureus() (tests.test_core.TestLoadSample method) TestClassify (class in tests.test_core) TestFeaturize (class in tests.test_core) TestLoadSample (class in tests.test_core) tests module tests.test_core module thresholds (tests.test_core.TestClassify attribute) (tests.test_core.TestFeaturize attribute) time (tests.test_core.TestFeaturize attribute) time_values (tests.test_core.TestFeaturize attribute)